Accepted Abstract 2016

List of Accepted Abstract

(Ordered by submission id, * indicates the presenting author)

1. Impact Of Relative Collagen Fibril Polarity In Determining The Signal Intensity In Second Harmonic Generation Microscopy

Couture Charles-André , Bancelin Stéphane , Van der Kolk Jarno , Popov Konstantin , Rivard Maxime , Légaré Katherine , Martel Gabrielle , Richard Hélène , Brown Cameron , Laverty Sheila , Ramunno Lora , Légaré François *,
*Institut National de la Recherche Scientifique, Varennes, Canada

2. Re-scan Confocal Microscopy: Scanning Twice For Better Resolution And High Sensitivity; Caracterization And Applications In Multicolor Measurements.

Giulia M.R. De Luca *, Ronald M.P. Breedijk , Emilie C.B. Desclos , Laura Dolz Edo , Gertien Smits , Sjoerd Stallinga , Ron Hoebe , Erik M. Manders ,
*University of Amsterdam, Amsterdam, Netherlands

4. Scanning Angle Interference Microscopy: Open Tools For Analysis And Data Acquisition

Kate Carbone , Ron Vale , Nico Stuurman *,
*UCSF/HHMI, San Francisco, USA

5. Imaging Porous Nanomaterials

Christy Landes *,
*Rice University, Houston, USA

7. A Computational Framework For Joint Pathology Image And Molecular Data Analysis

Vlad Popovici *,
*Masaryk University, Brno, Czech Republic

8. Determination Of Stoichiometry Of Macromolecular Complexes From Single Molecule Experiments

Dmitry Cherny *,
*University of Leicester, Leicester, United Kingdom

10. Image Scanning Microscopy

Jörg Enderlein *,
*Georg August University, Goettingen, Germany

11. Force Sensing And Quantitative Dstorm On Signal Transduction Proteins Inside The Integrin Adhesome

Harkes Rolf , Balcioğlu H. Emrah , Danen Eric H.J. , Schmidt Thomas *,
*Leiden University, , Netherlands

12. Spider. An Algorithm For Dynamic Super-resolution Bioimaging.

Siewert Hugelier *, Cyril Ruckebusch ,
*UNIVERSITE DE LILLE, ,

13. Single-cell Analysis Of The Bacterial Response To Oxidative Stress

Anne Meyer *, Michela De Martino ,
*TU Delft, Delft, Netherlands

14. Optimising High Resolution Measurements Of Protein Oligomers In Cells Using Neural Network Classification

Teodor Boyadzhiev *, Sarah Needham , Marisa Martin-Fernandez , Daniel Rolfe , Michael Hirsch ,
*Science & Technology Facilities Council, Didcot, UK

15. Theoretical Guidelines And Its Software Implementation For High-density Super-resolution Imaging

Sébastien Mailfert *, Sophie Brustlein , Roxane Fabre , Asma Rabaoui , Serge Monneret , Nicolas Bertaux , Didier Marguet ,
*Centre d'Immunologie de Marseille Luminy / CNRS-INSERM-AMU, Marseille, France

16. A Robust Reconstruction And Pattern Calibration Framework For Structured Illumination Microscopy

Ning Chu , Roland Nussbaumer , Laurène Donati *, Denis Fortun , Daniel Sage , Michael Unser ,
*Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland

17. Model-free Analysis Of Step-size Distributions To Detect And Quantify Stochastic Processes In Live Cells

Stefano Coppola *, Veer IP Keizer , Marcel JM Schaaf , Thomas Schmidt ,
*Leiden University, ,

18. Quantification Of Dna Accessibility In Chromatin

Babette E. de Jong *, Ruth Buning , Wietske Kropff , Kirsten Martens , He Meng , Kim Vendel , Artur Kaczmarczyk , John van Noort ,
*Leiden University, Leiden, The Netherlands

19. Intelligent Programmable Array Microscope (ipam) For Adaptive, High Speed, Large Format Optical Sectioning

Anthony de Vries *, Nathan Cook , Stephan Kramer , Donna Arndt-Jovin , Thomas Jovin ,
*Max Planck Institute for biophysical chemistry, Göttingen, Germany

20. Simplified Chromatic Aberration Correction For Single Molecule Localization Microscopy

Johnny Hendriks *, Thomas Gensch ,
*Forschungszentrum Jülich, Jülich, Germany

21. Single Objective Light-sheet Microscopy For High-speed Whole-cell 3d Super-resolution Imaging

Marjolein Meddens *, Sheng Liu , Conrad James , Thayne Edwards , Keith Lidke ,
*University of New Mexico, Albuquerque, United States

22. Estimating Localization Uncertainty From Superresolution Microscopy Images

Vladimir Ćurić *, Marin Linden , Elias Nygren , Johan Elf ,
*Uppsala University, Uppsala, Sweden

23. Balance Of Isotropic And Directed Forces Determines Cell Shape

Wim Pomp *, Koen Schakenraad , Hedde van Hoorn , Emrah Balcıoğlu , Erik Danen , Luca Giomi , Thomas Schmidt ,
*Leiden University, Leiden, Netherlands

24. Particle Image Correlation Spectroscopy Using 3d Correction Reveals Dna-binding Dynamics Of Transcription Factor

Veer Keizer *, Rolf Harkes , Thomas Schmidt , Marcel Schaaf ,
*University Leiden, ,

25. Inferring The Stoichiometry Of Macromolecular Complexes Using Localization Microscopy

Robert Nieuwenhuizen *, Mark Bates , Sjoerd Stallinga , Bernd Rieger ,
*Delft University of Technology, Delft, The Netherlands

26. Image Analysis Automation For Studying Yeast Polarization

Werner Daalman *, Liedewij Laan ,
*TU Delft, Delft, The Netherlands

28. Automated Analysis Of Phagocyte-pathogen Confrontation Assays

Susanne Brandes *, Stefanie Dietrich , Kerstin Hünniger , Oliver Kurzai , Marc Thilo Figge ,
*Hans-Knöll-Institute Jena, Jena, Germany

29. Optimizing Illumination And Reconstruction In Patterned Illumination Microscopy

Nadya Chakrova *, Bernd Rieger , Sjoerd Stallinga ,
*Delft University of Technology, Delft, Netherlands

30. Novel Photochromic Probes For Enhanced Contrast And Superresolution Imaging Modalities

Florencia Gillanders , Nathan Cook , Donna Arndt-Jovin , Pedro Aramendía , Thomas Jovin *,
*Max Planck Institute for Biophysical Chemistry, Göttingen, Germany

33. Super-resolution Mapping Of Non-specific Protein-interactions With An Antifouling Coating

Matthijs van Gurp , Menno Prins , Peter Zijlstra *,
*Eindhoven University of Technology, Eindhoven, Netherlands

34. Single Molecule Tracking Of Dye-tagged Glycans On Live Cells

Ben Ovryn *,
*Einstein College of Medicine, Bronx, USA

35. Widefield Flim For Cellular Imaging With Novel Acquisition Schemes Based On The Pi-max4-1024emb Gated Intensified Camera

Nathan Cook *, Donna Arndt-Jovin , Tamás Kovács , Peter Nagy , Thomas Jovin ,
*Max Planck Institute for Biophysical Chemistry, Göttingen, Germany

36. Novel 3d Whole Slide Imaging Platform For Digital Pathology

S. Mojtaba Shakeri *, Leon van der Graaff , Bas Hulsken , Lucas J. van Vliet , Sjoerd Stallinga ,
*Delft University of Technology, Delft, The Netherlands

37. Imaging With The Ipam

Donna Arndt-Jovin *, Anthony de Vries , Vaishali Sharma , Nathan Cook , Thomas Jovin ,
*Max Planck Institute for Biophysical Chemistry, Goettingen, Germany

38. Heterogeneous Thermal Distribution Dependent On The Spatial Characteristics Of Heat-source Organelle

Noriko Hiroi *, Yusuke Fujita , Ryuichi Tanimoto , Kaito Ii , Kota Mashimo , Yuichiro Nakai , Takumi Hiraiwa , Akira Funahashi ,
*Keio University, Yokohama, Japan

39. Machine-learning-based Segmentation For The Quantitative Analysis Of Constitutive Heterochromatin And Euchromatin In Mouse Early Embryos

Raphael Thierry *,
*Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland

40. Validation Of Clustering Algorithms In Benchmark And Super Resolution Data

Daniel J. Cross *, Nathaniel O. Wand , Robert K. Neely , Steven G. Thomas , Natalie S. Poulter , Iain B. Stlyes ,
*University of Birmingham, Birmingham, United Kingdom

41. Characterization Of Membrane Receptor Clustering With Super-resolution Microscopy.

Katarzyna Kedziora *, Daniela Leyton-Puig , Bram van den Broek , Kees Jalink ,
*NKI, Amsterdam, The Netherlands

42. Tracking Gold Nanorods In Live Cells

Sara Carozza *, Veer Keizer , Aimee Boyle , Marcel Schaaf , Alexander Kros , John van Noort ,
*Leiden University, Leiden, Netherlands

43. Low Na Super Resolution Fluorescence Microscopy Compatible With Electron Microscopy

Sajjad Mohammadian *, Alexandra V. Agronskaia , Gerhard A. Blab , Hans C. Gerritsen ,
*Utrecht University, Utrecht, Netherlands

44. Confocal Microscope Psf In Presence Of Strong Refractive Index Mismatch: Experimental Study Vs Theory

Sergey Loginov *, Alexandra Agronskaia , Gerhard Blab , Hans Gerritsen ,
*Utrecht University, Utrecht, Netherlands

45. Fluorescently Labeled Silica Coated Metal Nanoparticles As Possible Fiducial Markers For Correlative Microscopy

Jantina Fokkema *, Gerhard A. Blab , Andries Meijerink , Hans C. Gerritsen ,
*Utrecht University, Utrecht, The Netherlands

46. Simulated Single Molecule Microscopy With Smeagol - Avoiding Inverse Crimes In Live Cell Superresolution Microscopy

Martin Lindén *, Vladimir Ćurić , Alexis Boucharin , David Fange , Johan Elf ,
*Uppsala university, Uppsala, Sweden

47. Sr-tesseler: Multiscale Polygon-based Segmentation And Quantification Software For Single-molecule Localization Microscopy Data

Florian Levet *, Eric Hosy , Adel Kechkar , Corey Butler , Anne Beghin , Daniel Choquet , Jean-Baptiste Sibarita ,
*Interdisciplinary Institute for Neuroscience, Bordeaux, France

48. Absolute Depth Position Improves 3d Localization At The Nanoscale

Nicolas Bourg , Clement Cabriel , Guillaume Dupuis , Emmanuel Fort , Sandrine Lévêque-Fort *,
*CNRS, Orsay, France

49. Mscarlet A Novel Monomeric Red Fluorescent Protein Series For Advanced Fluorescence Microscopy And Quantitative Bioimaging

Daphne Bindels *, Lindsay Haarbosch , Laura van Weeren , Marten Postma , Theodorus Gadella , Mark HInk ,
*University of Amsterdam, Amsterdam, The Netherlands

50. The Effect Of Tetraspanin Expression On Erbb Receptor Mobility And Confinement In The Plasma Membrane Of Breast Cancer Cells

Emma Lonnen *, Elena Odintsova , Rob Neely , Ela Claridge ,
*University of Birmingham, ,

51. Quantifying Protein And Lipid Accumulation At Sites Of Membrane Curvature

Michelle Knowles *, Aml Alnaas , Carrie Moon , Mitchell Alton ,
*University of Denver, Denver, United States

52. Quantitative Evalutation Of Accuracy And Noise Of Individual Pixels In A Scientific Cmos (scmos) Camera

Keith Bennett *, Fang Huang , Hiroyuki Kawai ,
*Hamamatsu Photonics, K.K., ,

53. Three-dimensional Superresolution And Tracking Of Overlapping Emitters Using The Double-helix Point Spread Funciton

Anthony Barsic , Anurag Agrawal *, Rafael Piestun ,
*University of Colorado at Boulder, Boulder, U.S.A.

54. Chanel Splitting For Maximum Intensity Imaging Of Microglia Via Huygens Platform

DR RANJEET KUMAR *,
*HINDU College, University of Delhi, New Delhi, INDIA

55. Nanorulers Resolved With Em-ccd And Scmos Cameras Enable Super-resolutions Beyond The Diffraction Limit

Benjamin Eggart *, Max Scheible , Carsten Forthmann ,
*Hamamatsu Photonics GmbH, Munich, Germany

56. Scalable Quantitative Characterization Of Three-dimensional Multicellular Aggregates At Single Cell Resolution

Alexander Schmitz *, Sabine Fischer , Christian Mattheyer , Francesco Pampaloni , Ernst Stelzer ,
*Goethe University, Frankfurt, Germany

57. Prolonged Rapamycin Treatment Alters Acinar Morphology In Mammary Breast Cancer Spheroids

Sabine C. Fischer *, Alexander Schmitz , Katharina Hötte , Michael Koch , Ernst H.K. Stelzer , Francesco Pampaloni ,
*Goethe University Frankfurt, Frankfurt am Main, Germany

58. Measuring Point Spread Functions And Calibrating Axial Distances Of Confocal And Sted Microscopes

Ernest van der Wee *, Thijs Besseling , Relinde Moes , Jissy Jose , Alfons van Blaaderen ,
*Utrecht University, Utrecht, The Netherlands

59. Remodeling Nuclear Architecture Allows Efficient Transport Of Herpesvirus Capsids By Diffusion

Jens B Bosse *, Ian B Hogue , Marina Feric , Stephan Y Thiberge , Beate Sodeik , Clifford P Brangwynne , Lynn W Enquist ,
*Heinrich-Pette-Institut Leibniz-Institut für Experimentelle Virologie, Hamburg, Germany

60. Electron-beam Induced Optical Superresolution In Correlative Light-electron Microscopy

Lenard M. Voortman *, Aaro Väkeväinen , Pieter Kruit , Jacob P. Hoogenboom ,
*Delft University of Technology, Delft, Netherlands

61. Integration Of A Commercial Confocal Laser Scanning Microscope (clsm) In An Sem

Josey Sueters *, Pieter Kruit , Jacob Hoogenboom ,
*TU Delft, Delft, Netherlands

62. Scanning Electron Microscopy Snapshots Of Live-cell Dynamics Guided By In-situ Fluorescence Imaging

Nalan Liv *, Daan van Oosten Slingeland , Pieter Kruit , Jacob Hoogenboom ,
*Delft University of Technology, Delft, The Netherlands

63. Single-molecule View Of Dna-guided Dna Interference By Thermus Thermophilus Argonaute

Malwina Szczepaniak *, Tao Ju Cui , Daan Swarts , Stanley Chandradoss , John van der Oost , Chirlmin Joo ,
*TU Delft, Delft, The Netherlands

64. Camera-based Single-molecule Fret Detection With Improved Time Resolution

Shazia Farooq , Johannes Hohlbein *,
*Wageningen UR, Wageningen, Netherlands

65. An Evolutionary Arms Race: How Bacteria Deal With Mutated Invaders

Luuk Loeff *, Timothy Blosser , Edze Westra , Marnix Vlot , Tim Kunne , Cees Dekker , Stan Brouns , Chirlmin Joo ,
*Delft University of Technology, Den Haag, Netherlands

67. A 4d View On Mrna

David Grunwald *,
*UMASS, Worcester, USA

68. Quantitative Raman Imaging Of Nucleic Acids And Tryptophan For Distinction Of Normal Human Skin Cells And Tumorigenic Keratinocytes

Paola Piredda , Manuel Berning , Petra Boukamp , Andreas Volkmer *,
*University of Stuttgart, Stuttgart, Germany

69. Polymer Modeling And Super-resolution Microscopy Determine The Compaction Of Human Telomeres

Kyle Douglass *, Aleksandra Vancevska , Verena Pfeiffer , Joachim Lingner , Suliana Manley ,
*EPFL, Lausanne, Switzerland

70. Analysis And Archiving Of High-dimensional Bio-imaging Data:towards An Open, Extensible Framework.

Ahmed Fetit *, Sebastien Besson , Ewan McDowall , Ann Wheeler ,
*University of Edinburgh, ,

71. Reconstructing Discrete Features Of Nucleocytoplasmic Transport Using Projected Density Maps

Yu-Chieh Chung , Li-Chun Tu , Max Huisman *, Carlas Smith , David Grunwald ,
*UMass Medical School, Worcester, United States

72. Radiomics In Paediatric Neuro-oncology.

Ahmed Fetit *, Jan Novak , Andrew Peet , Theodoros Arvanitis ,
*a. University of Warwick, b. University of Edinburgh, ,

73. Localization Accuracy In Fluorescence Microscopy Based On Experimentally Acquired Image Sets

Amir Tahmasbi , E. Sally Ward , Raimund Ober *,
*Texas A&M University, College Station, United States

74. Nanoscale Imaging And Quantitative Nanomechanical Characterization Of Cells And Biomaterials By Correlative Atomic Force And Optical Microscopy

Torsten Mueller *, Heiko Haschke , Ben Holmes , Torsten Jähnke ,
*JPK Instruments AG, Berlin, Germany

75. Mapping Molecules In Fluorescence Nanoscopy

Haisen Ta , Jan Keller-Findeisen *, Stefan Hell ,
*MPI for Biophysical Chemistry, Goettingen, Germany

76. Super-resolution Imaging Via Spectral Separation Of Quantum Dots

Kemal Keseroglu *, Andrei Sapelkin ,
*Queen Mary University of London, LONDON, United Kingdom

77. Cell Cluster Analysis In Drosophila Wing Discs

Burri Olivier , Romain Guiet , Claudine Neyen , Fisun Hamaratoglu , Arne Seitz *,
*Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland

78. From Nanoscale To Mesoscale: Integrating Advanced Microscopy Techniques And Image Quantification To Reveal The Ultrastructure And Coordinated Dynamics Of Mechanosensory Podosomes

Koen van den Dries *,
*Radboud Institute for Molecular Life Sciences, Radboudumc University Medical Center, Nijmegen, Netherlands

79. Striped-illumination Microscopy Combined With A Blind Sim-based New Iterative Approach Allows For High-resolution 4d Deep-tissue Imaging

Zoltan Cseresnyes *, Ralf Lipinski-Köhler , Asylkhan Rakhymzhan , Ruth Leben , David Reismann , Anca Margineanu , Anje Sporbert , Helena Radbruch , Anja Hauser , Raluca Niesner ,
*DRFZ, Berlin, Germany

80. High-content Screening Of Micro-environments As Perturbing Agents

Michel Nederlof *, Damir Sudar ,
*Quantitative Imaging Systems, Inc, Portland, USA

82. On Characterizing Membrane Protein Clusters With Model-free Spatial Correlation Approaches

Arun Shivanandan *, Aleksandra Radenovic ,
*Ecole Polytechnique Federale de Lausanne, ,

84. Automatic Cell Segmentation Of 3d Third Harmonic Microcopy Images Of Brain Tissue

Zhiqing Zhang *,
*VU Amsterdam, Amsterdam, Netherlands

85. Bridging Live-cell Endo-lysosomal Dynamics To 3d Electron Microscopy

Job Fermie *, Nalan Liv , Corlinda Ten Brink , Hans Gerritsen , Judith Klumperman ,
*University Medical Center Utrecht, Utrecht, The Netherlands

88. Noise-corrected Principal Component Analysis Of Fluorescence Lifetime Imaging (flim) Data

Alix Le Marois *, Klaus Suhling , Rainer Heintzmann ,
*King's College, London, UK